Section: New Software and Platforms

KisSplice2RefTranscriptome

Keywords: Bioinformatics - NGS - Transcriptomics

Functional Description: KisSplice2RefTranscriptome enables to combine the output of KisSplice with the output of a full length transcriptome assembler, thus allowing to predict a functional impact for the positioned SNPs, and to intersect these results with condition-specific SNPs. Overall, starting from RNA-seq data only, we obtain a list of condition-specific SNPs stratified by functional impact.

• Participants: Helene Lopez Maestre, Mathilde Boutigny and Vincent Lacroix

• Contact: Vincent Lacroix

• URL: http://kissplice.prabi.fr/tools/kiss2rt/